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1

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 10847 (14th International Symposium, ISBRA 2018, Beijing, China, June 8-11, 2018, Proceedings) || A Deep Learning Method for Prediction of Benign Epilepsy with Centrotemporal Spikes

Zhang, Fa, Cai, Zhipeng, Skums, Pavel, Zhang, Shihua

Year:

2018

Language:

english

File:

PDF, 401 KB

english, 2018

2

Increased mitochondrial genetic diversity in persons infected with hepatitis C virus

Campo, David S., Roh, Ha-Jung, Pearlman, Brian L., Fierer, Daniel S., Ramachandran, Sumathi, Vaughan, Gilberto, Hinds, Andrew, Dimitrova, Zoya, Skums, Pavel, Khudyakov, Y.

Journal:

CMGH Cellular and Molecular Gastroenterology and Hepatology

Year:

2016

Language:

english

File:

PDF, 2.98 MB

english, 2016

3

Computational Approaches to Detect Illicit Drug Ads and Find Vendor Communities Within Social Media Platforms

Zhao, Fengpan, Skums, Pavel, Zelikovsky, Alexander, Sevigny, Eric L., Swahn, Monica Haavisto, Strasser, Sheryl M., Huang, Yan, Wu, Yubao

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2020

Language:

english

File:

PDF, 8.15 MB

english, 2020

4

Temperature- and Pressure-Dependent Electrical Resistance of Lead Sulfide

S. A. Al'fer, V. F. Skums

Journal:

Inorganic Materials

Year:

2001

Language:

english

File:

PDF, 51 KB

english, 2001

5

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 9683 || An Efficient Algorithm for Finding All Pairs k-Mismatch Maximal Common Substrings

Bourgeois, Anu, Skums, Pavel, Wan, Xiang, Zelikovsky, Alex

Year:

2016

Language:

english

File:

PDF, 276 KB

english, 2016

6

ChemInform Abstract: Synthesis and Physical-Chemical Properties of Ternary Compounds of the GeTe-Sb2Te3 System.

SKOROPANOV, A. S., SKUMS, V. F., AL'FER, S. A., GUSEV, E. A., VECHER, A. A.

Journal:

Year:

1987

File:

PDF, 127 KB

1987

7

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 11490 (15th International Symposium, ISBRA 2019, Barcelona, Spain, June 3–6, 2019, Proceedings) ||

Cai, Zhipeng, Skums, Pavel, Li, Min

Year:

2019

Language:

english

File:

PDF, 11.78 MB

english, 2019

8

[Lecture Notes in Computer Science] Computational Advances in Bio and Medical Sciences Volume 12029 (9th International Conference, ICCABS 2019, Miami, FL, USA, November 15â17, 2019, Revised Selected Papers) ||

MÄndoiu, Ion, Murali, T. M., Narasimhan, Giri, Rajasekaran, Sanguthevar, Skums, Pavel, Zelikovsky, Alexander

Year:

2020

File:

PDF, 16.71 MB

2020

9

Physico-chemical study of Ge(Pb)Te-Bi2(Sb2)Te3 system ternary compounds

A.S. Skoropanov, B.L. Valevsky, V.F. Skums, G.I. Samal, A.A. Vecher

Journal:

Thermochimica Acta

Year:

1985

Language:

english

File:

PDF, 205 KB

english, 1985

10

Edge intersection graphs of linear 3-uniform hypergraphs

P.V. Skums, S.V. Suzdal, R.I. Tyshkevich

Journal:

Electronic Notes in Discrete Mathematics

Year:

2005

Language:

english

File:

PDF, 153 KB

english, 2005

11

Edge intersection graphs of linear 3-uniform hypergraphs

P.V. Skums, S.V. Suzdal, R.I. Tyshkevich

Journal:

Discrete Mathematics

Year:

2009

Language:

english

File:

PDF, 1.17 MB

english, 2009

12

Operator decomposition of graphs and the reconstruction conjecture

P.V. Skums, S.V. Suzdal, R.I. Tyshkevich

Journal:

Discrete Mathematics

Year:

2010

Language:

english

File:

PDF, 475 KB

english, 2010

13

Squares of Intersection Graphs and Induced Matchings

Yu.L. Orlovich, P.V. Skums

Journal:

Electronic Notes in Discrete Mathematics

Year:

2006

Language:

english

File:

PDF, 241 KB

english, 2006

14

Reconstruction of graphs with special homogeneous sets

Pavel Skums, Regina Tyshkevich

Journal:

Electronic Notes in Discrete Mathematics

Year:

2006

Language:

english

File:

PDF, 112 KB

english, 2006

15

Operator Decomposition of Graphs and the Reconstruction Conjecture

P.V. Skums, S.V. Suzdal, R.I. Tyshkevich

Journal:

Electronic Notes in Discrete Mathematics

Year:

2007

Language:

english

File:

PDF, 167 KB

english, 2007

16

Bipartite operator decomposition of graphs and the reconstruction conjecture

P.V. Skums, R.I. Tyshkevich

Journal:

Electronic Notes in Discrete Mathematics

Year:

2007

Language:

english

File:

PDF, 164 KB

english, 2007

17

Physico-chemical investigation of Pb(Ge) Te-Bi2(Sb2)Te3: System ternary compounds formation

Alexandre S. Skoropanov, Boleslav L. Valevsky, Valentin F. Skums, Georgi I. Samal

Journal:

Thermochimica Acta

Year:

1985

Language:

english

File:

PDF, 240 KB

english, 1985

18

Electrical Resistance of CdSe and CdTe at Elevated Temperatures and Pressures

S. A. Al'fer, V. F. Skums

Journal:

Inorganic Materials

Year:

2001

Language:

english

File:

PDF, 43 KB

english, 2001

19

Efficient error correction for next-generation sequencing of viral amplicons

Skums, Pavel, Dimitrova, Zoya, Campo, David S, Vaughan, Gilberto, Rossi, Livia, Forbi, Joseph C, Yokosawa, Jonny, Zelikovsky, Alex, Khudyakov, Yury

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 982 KB

english, 2012

20

Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows

Pavel Skums, Nicholas Mancuso, Alexander Artyomenko, Bassam Tork…

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 1.10 MB

english, 2013

21

-product of graphs, -threshold graphs and threshold-width of graphs

Journal:

Discrete Mathematics

Year:

2013

Language:

english

File:

PDF, 470 KB

english, 2013

22

Next-generation sequencing reveals large connected networks of intra-host HCV variants

David S Campo,Zoya Dimitrova,Lilian Yamasaki,Pavel Skums,Daryl TY Lau…

Journal:

Year:

2014

Language:

english

File:

PDF, 1.29 MB

english, 2014

23

Analysis of the Evolution and Structure of a Complex Intrahost Viral Population in Chronic Hepatitis C Virus Mapped by Ultradeep Pyrosequencing

Palmer, B. A., Dimitrova, Z., Skums, P., Crosbie, O., Kenny-Walsh, E., Fanning, L. J.

Journal:

Journal of Virology

Year:

2014

Language:

english

File:

PDF, 1.47 MB

english, 2014

24

Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling

Skums, P., Artyomenko, A., Glebova, O., Ramachandran, S., Mandoiu, I., Campo, D. S., Dimitrova, Z., Zelikovsky, A., Khudyakov, Y.

Journal:

Year:

2015

Language:

english

File:

PDF, 2.62 MB

english, 2015

25

[IEEE 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Atlanta, GA (2011.11.12-2011.11.15)] 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Modelling differential interferon resistance of HCV quasispecies

Skums, P., Campo, D. S., Dimitrova, Z., Vaughan, G., Lau, D. T., Khudyakov, Y.

Year:

2011

Language:

english

File:

PDF, 749 KB

english, 2011

26

[IEEE 2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Las Vegas, NV, USA (2012.02.23-2012.02.25)] 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - Workshop: A maximum likelihood method for quasispecies spectrum assembly

Mancuso, Nicholas, Tork, Bassam, Skums, Pavel, Ganova-Raeva, Lilia, Mandoiu, Ion, Zelikovsky, Alex

Year:

2012

Language:

english

File:

PDF, 97 KB

english, 2012

27

Intra-host diversity and evolution of hepatitis C virus endemic to Côte d'Ivoire

Forbi, Joseph C., Campo, David S., Purdy, Michael A., Dimitrova, Zoya E., Skums, Pavel, Xia, Guo-liang, Punkova, Lili T., Ganova-Raeva, Lilia M., Vaughan, Gilberto, Ben-Ayed, Yousr, Switzer, William M

Journal:

Journal of Medical Virology

Year:

2014

Language:

english

File:

PDF, 391 KB

english, 2014

28

[IEEE 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - New Orleans, LA (2013.6.12-2013.6.14)] 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - kGEM: An EM-based algorithm for local reconstruction of viral quasispecies

Artyomenko, Alexander, Mancuso, Nicholas, Zelikovsky, Alex, Skums, Pavel, Mandoiu, Ion

Year:

2013

Language:

english

File:

PDF, 117 KB

english, 2013

29

[IEEE 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Miami, FL, USA (2014.6.2-2014.6.4)] 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - New computational methods for assessing the genetic relatedness of close viral variants

Campo, David S., Dimitrova, Zoya, Guo-Liang Xia,, Skums, Pavel, Ganova-Raeva, Lilia, Khudyakov, Yury

Year:

2014

Language:

english

File:

PDF, 103 KB

english, 2014

30

[IEEE 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - New Orleans, LA (2013.6.12-2013.6.14)] 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - Optimizing pooling strategies for the massive next-generation sequencing of viral samples

Skums, Pavel, Glebova, Olga, Zelikovsky, Alex, Mandoiu, Ion, Khudyakov, Yury

Year:

2013

Language:

english

File:

PDF, 35 KB

english, 2013

31

[IEEE 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - New Orleans, LA (2013.6.12-2013.6.14)] 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - Computational analysis and modelling of intra-host adaptation of hepatitis C virus: The role of immune cross-reactivity of HCV quasispecies

Skums, Pavel, Campo, David S., Dimitrova, Zoya, Bunimovich, Leonid, Khudyakov, Yury

Year:

2013

Language:

english

File:

PDF, 37 KB

english, 2013

32

[IEEE 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Miami, FL, USA (2014.6.2-2014.6.4)] 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data

Skums, Pavel, Artyomenko, Alexander, Glebova, Olga, Zelikovsky, Alex, Campo, David S., Dimitrova, Zoya, Khudyakov, Yury

Year:

2014

Language:

english

File:

PDF, 36 KB

english, 2014

33

[IEEE 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - New Orleans, LA (2013.6.12-2013.6.14)] 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - Estimation of viral population structure from amplicon-based reads

Mancuso, Nicholas, Artyomenko, Alexander, Zelikovsky, Alex, Skums, Pavel, Mandoiu, Ion

Year:

2013

Language:

english

File:

PDF, 111 KB

english, 2013

34

[IEEE 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Atlanta, GA (2011.11.12-2011.11.15)] 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Viral quasispecies reconstruction from amplicon 454 pyrosequencing reads

Mancuso, N., Tork, B., Skums, P., Mandoiu, I., Zelikovsky, A.

Year:

2011

Language:

english

File:

PDF, 961 KB

english, 2011

35

[IEEE 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - New Orleans, LA (2013.6.12-2013.6.14)] 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - Mutational robustness of hepatitis C virus intra-host variants

Campo, David S., Dimitrova, Zoya, Skums, Pavel, Khudyakov, Yury

Year:

2013

Language:

english

File:

PDF, 100 KB

english, 2013

36

[IEEE 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Atlanta, GA (2011.11.12-2011.11.15)] 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Assessments of intra- and inter-host diversity of hepatitis C virus using Next Generation Sequencing and Mass spectrometry

Dimitrova, Z., Campo, D. S., Ramachandran, S., Vaughan, G., Ganova-Raeva, L., Lin, Y., Forbi, J. C., Xia, G., Skums, P., Pearlman, B., Khudyakov, Y.

Year:

2011

Language:

english

File:

PDF, 779 KB

english, 2011

37

Antigenic cooperation among intrahost HCV variants organized into a complex network of cross-immunoreactivity

Skums, Pavel, Bunimovich, Leonid, Khudyakov, Yury

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.13 MB

english, 2015

38

Cryptic Hepatitis B and E in Patients With Acute Hepatitis of Unknown Etiology

Ganova-Raeva, Lilia, Punkova, Lili, Campo, David S., Dimitrova, Zoya, Skums, Pavel, Vu, Nga H., Dat, Do. T., Dalton, Harry R., Khudyakov, Yury

Journal:

The Journal of Infectious Diseases

Year:

2015

Language:

english

File:

PDF, 1.20 MB

english, 2015

39

Network analysis of the chronic Hepatitis C virome defines HVR1 evolutionary phenotypes in the context of humoral immune responses

Palmer, Brendan A., Schmidt-Martin, Daniel, Dimitrova, Zoya, Skums, Pavel, Crosbie, Orla, Kenny-Walsh, Elizabeth, Fanning, Liam J.

Journal:

Journal of Virology

Year:

2015

Language:

english

File:

PDF, 1.37 MB

english, 2015

40

Accurate Genetic Detection of Hepatitis C Virus Transmissions in Outbreak Settings

Campo, David S., Xia, Guo-Liang, Dimitrova, Zoya, Lin, Yulin, Forbi, Joseph C., Ganova-Raeva, Lilia, Punkova, Lili, Ramachandran, Sumathi, Thai, Hong, Skums, Pavel, Sims, Seth, Rytsareva, Inna, Vaugha

Journal:

The Journal of Infectious Diseases

Year:

2016

File:

PDF, 740 KB

2016

41

Accurate Genetic Detection of Hepatitis C Virus Transmissions in Outbreak Settings

Campo, David S., Xia, Guo-Liang, Dimitrova, Zoya, Lin, Yulin, Forbi, Joseph C., Ganova-Raeva, Lilia, Punkova, Lili, Ramachandran, Sumathi, Thai, Hong, Skums, Pavel, Sims, Seth, Rytsareva, Inna, Vaugha

Journal:

The Journal of Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 740 KB

english, 2016

42

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 9683 ||

Bourgeois, Anu, Skums, Pavel, Wan, Xiang, Zelikovsky, Alex

Year:

2016

Language:

english

File:

PDF, 25.77 MB

english, 2016

43

Surgical treatment of neuroendocrine tumors of the pancreas. A single institution's experience

Usenko, A.U., Nichitaylo, M.E., Skums, A.V., Shkarban, V.P., Skums, A.A.

Journal:

Year:

2016

Language:

english

File:

PDF, 56 KB

english, 2016

44

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 9683 || Genome-Wide Structural Modeling of Protein-Protein Interactions

Bourgeois, Anu, Skums, Pavel, Wan, Xiang, Zelikovsky, Alex

Year:

2016

Language:

english

File:

PDF, 1.29 MB

english, 2016

45

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 9683 || FSG: Fast String Graph Construction for De Novo Assembly of Reads Data

Bourgeois, Anu, Skums, Pavel, Wan, Xiang, Zelikovsky, Alex

Year:

2016

Language:

english

File:

PDF, 220 KB

english, 2016

46

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 9683 || Multi-genome Scaffold Co-assembly Based on the Analysis of Gene Orders and Genomic Repeats

Bourgeois, Anu, Skums, Pavel, Wan, Xiang, Zelikovsky, Alex

Year:

2016

Language:

english

File:

PDF, 373 KB

english, 2016

47

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 9683 || Identifying Essential Proteins by Purifying Protein Interaction Networks

Bourgeois, Anu, Skums, Pavel, Wan, Xiang, Zelikovsky, Alex

Year:

2016

Language:

english

File:

PDF, 640 KB

english, 2016

48

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 9683 || Predicting MicroRNA-Disease Associations by Random Walking on Multiple Networks

Bourgeois, Anu, Skums, Pavel, Wan, Xiang, Zelikovsky, Alex

Year:

2016

Language:

english

File:

PDF, 185 KB

english, 2016

49

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 9683 || Differential Functional Analysis and Change Motifs in Gene Networks to Explore the Role of Anti-sense Transcription

Bourgeois, Anu, Skums, Pavel, Wan, Xiang, Zelikovsky, Alex

Year:

2016

Language:

english

File:

PDF, 1.80 MB

english, 2016

50

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 9683 || Methods for Genome-Wide Analysis of MDR and XDR Tuberculosis from Belarus

Bourgeois, Anu, Skums, Pavel, Wan, Xiang, Zelikovsky, Alex

Year:

2016

Language:

english

File:

PDF, 287 KB

english, 2016

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